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The needs for chemistry standards, database tools and data curation at the chemical-biology interface

This presentation was given at the Society of Laboratory Automation and Screening in San Diego, California on January 25th 2016.

The needs for chemistry standards, database tools and data curation at the chemical-biology interface

This presentation will highlight known challenges with the production of high quality chemical databases and outline recent efforts made to address these challenges.  Specific examples will be provided illustrating these challenges within the U.S. Environmental Protection Agency (EPA) Computational Toxicology Program. This includes consolidating EPA’s ACToR and DSSTox databases, augmenting computed properties and list search features, and introducing quality metrics to assess confidence in chemical structure assignments across hundreds of thousands of chemical substance records.  The past decade has seen enormous investments in the generation and release of data from studies of chemicals and their toxicological effects.  There is, however, commonly little concern given to provenance and, more generally, to the quality of the data.  The presentation will emphasize the importance of rigorous data review procedures, progress in web-based public access to accurate chemical data sets for use in predictive modeling, and the benefits that these efforts will deliver to toxicologists to embrace the “Big Data” era.

This abstract does not necessarily represent the views of the U.S. Environmental Protection Agency

The presentation is available from the EPA’s Science Inventory site as a PDF file here.

 
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Posted by on January 28, 2016 in EPA Presentations

 

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